species:   Rhsol
pid:       PID0592
parent:    Rhi-milR-68
paralog:   
locus:     KB317701.1:980275-980364
matures:   ['GAGGAUCUGUAUUUGUGGAGGGG', 'UCAUCGCCUGUACCACGUUUCAU']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317701.1:980275-980364

0 out of bounds
9 alignments
8 proper strand
7 stranded perfect matches

        **************************                    **************************          
GAUAGUUUUCUCAUCGCCUGUACCACGUUUCAUUGUAGGGAUUGGGAGAUUGGCAGUGAGGAUCUGUAUUUGUGGAGGGGAAAAGCUUGG
.....(((((((.((((..((((....(((((((((...((((....)))).)))))))))....))))..)))).))))))).......
---------------------------------------------------------GAGGAUCUGUAUUUGUGGAGGGG---------- l=23 a=0 c
----------UCAUCGCCUGUACCACGUUUCAU--------------------------------------------------------- l=23 a=0 c*
--------------------------------------------------------UGAGGAUCUGUAUUUGUGGAGGGG---------- l=24 a=2 ma
----------UCAUCGCCUGUACCACGUUUCAUU-------------------------------------------------------- l=24 a=0 ma*

--------------------------------------------------------UGAGGAUCUGUAUUUGUGGAGG------------ l=22 a=1 
--------------------------------------------------------UGAGGAUCUGUAUUUGUGGAGGGG---------- l=24 a=2 (ma)
-----------------------------------UAGGGAUUGGGAGAUUGGCAGUG-------------------------------- l=23 a=1 
---------------------------------UGUAGGGAUUGGGAGAUUGGC------------------------------------ l=21 a=1 
---------------------------------UGUAGGGAUUGGGAGAUUGGCu----------------------------------- l=22 a=1 
-----------------------------UCAUUGUAGGGAUUGGGAGAUU--------------------------------------- l=22 a=1 
---------------------------UUUCAUUGUAGGGAUUGGGAGA----------------------------------------- l=22 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101100
fn-011
